Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 351
Gene Symbol: APP
APP
0.400 AlteredExpression disease BEFREE Models of AD include: aged monkeys that show both cognitive/memory deficits and cellular abnormalities (amyloid deposition/cytoskeletal abnormalities of neurons) in cortex and hippocampus; and Tg mice that express mutant human FAD-linked genes (i.e., APP and PS1) and show increased levels of A.42, amyloid deposits, dystrophic neurites, and local responses of astrocytes and microglia. 9683997 1997
Entrez Id: 351
Gene Symbol: APP
APP
0.400 AlteredExpression disease BEFREE To study the effect of amyloid deposits on cell cycle related events in vivo, the expression of cell cycle markers was examined by immunohistochemistry in amyloid precursor protein (APP) transgenic mice (APP23 mice, Swedish double mutation). 12923647 2003
Entrez Id: 351
Gene Symbol: APP
APP
0.400 AlteredExpression disease BEFREE Mouse models using APP-transgene overexpression to generate amyloid plaques have shown to model only certain parts of the disease. 28637503 2017
Entrez Id: 23621
Gene Symbol: BACE1
BACE1
0.090 AlteredExpression disease BEFREE In APP/PS1 transgenic mice, the nanocomplexes significantly decrease BACE1 mRNA and the amyloid plaques, suppress phosphorylated tau protein levels, as well as promote hippocampal neurogenesis. 29679667 2018
Entrez Id: 54209
Gene Symbol: TREM2
TREM2
0.030 AlteredExpression disease BEFREE Up-regulation of TREM2 accelerates the reduction of amyloid deposits and promotes neuronal regeneration in the hippocampus of amyloid beta1-42 injected mice. 30790627 2019
Entrez Id: 4311
Gene Symbol: MME
MME
0.020 AlteredExpression disease BEFREE We analyzed neprilysin mRNA and protein levels in cerebral cortex from 10 cognitively normal elderly subjects with amyloid plaques (NA), 10 cases of AD, and 10 control cases free of amyloid plaques. 16226260 2005
Entrez Id: 10347
Gene Symbol: ABCA7
ABCA7
0.010 AlteredExpression disease BEFREE We found that ABCA7 loss doubled insoluble Aβ levels and amyloid plaques in the brain. 26517904 2015
Entrez Id: 8503
Gene Symbol: PIK3R3
PIK3R3
0.010 AlteredExpression disease BEFREE High ranking genes include a number previously linked in gene expression studies to β-amyloid plaque formation in the AD brain (PIK3R3,PIK3CG,PRKCAandPRKCB), and to AD related changes in hippocampal gene expression (ADCY2, ACTN1, ACACA, and GNAI1). 22982105 2012
Entrez Id: 1593
Gene Symbol: CYP27A1
CYP27A1
0.010 AlteredExpression disease BEFREE In Alzheimer's disease (AD), CYP46A1 shows prominent expression in astrocytes and around amyloid plaques, whereas CYP27A1 expression decreases in neurons and is not apparent around amyloid plaques but increases in oligodendrocytes. 15148325 2004
Entrez Id: 114548
Gene Symbol: NLRP3
NLRP3
0.010 AlteredExpression disease BEFREE Treatment of 3xTg-AD mice with flavocoxid reduced: (1) learning and memory loss; (2) the increased eicosanoid production and the phosphorylation level of amyloid precursor protein (APP-pThr668), Aβ 1-42, p-tau (pThr181), pERK, and the activation of the NLRP3 inflammasome; (3) plaques; and (4) neuronal loss, compared to saline-treated animals. 28238167 2017
Entrez Id: 836
Gene Symbol: CASP3
CASP3
0.010 AlteredExpression disease BEFREE In AD, a considerable number of hippocampal neurons showed DNA fragmentation with a 3 to 5.7 fold increase related to neurofibrillary tangles and amyloid deposits, but only exceptional neurons displayed apoptotic morphology (1 in 1100-5000) and cytoplasmic immunoreactivity for ARPs and activated caspase-3 (1 in 2600 to 5650 hippocampal neurons), whereas no neurons were labeled in age-matched controls. 10961423 2000
Entrez Id: 51361
Gene Symbol: HOOK1
HOOK1
0.010 AlteredExpression disease BEFREE Furthermore, Hook proteins are associated with pathological hallmarks in AD; Hook1 and Hook3 are localized to tau aggregates and Hook2 to glial components within amyloid plaques. 25799409 2015
Entrez Id: 4504
Gene Symbol: MT3
MT3
0.010 AlteredExpression disease BEFREE Amyloid plaque burden and/or hAPP expression were decreased in the cortex and hippocampus of MT-3-deficient females. 22722772 2012
Entrez Id: 824
Gene Symbol: CAPN2
CAPN2
0.010 AlteredExpression disease BEFREE Moreover, synaptosomal calpain-2 was hyperactivated in frontal neocortical tissue samples of post-mortem brains of AD-dementia subjects and correlated significantly with decline in tests for cognitive and memory functions, and increase in levels of β-amyloid deposits in brain. 30177812 2018
Entrez Id: 3064
Gene Symbol: HTT
HTT
0.010 AlteredExpression disease BEFREE In human amyloid precursor protein transgenic Tg2576 mice with amyloid plaque pathology, similar neuronal HTT expression patterns and a distinct association of HTT with Abeta plaques were revealed by immunohistochemical double labelling. 31109380 2019
Entrez Id: 1513
Gene Symbol: CTSK
CTSK
0.010 AlteredExpression disease BEFREE In situ hybridization of γ-enolase and cathepsin X revealed that mRNAs for both enzymes were expressed abundantly around amyloid plaques. 23621429 2013
Entrez Id: 1052
Gene Symbol: CEBPD
CEBPD
0.010 AlteredExpression disease BEFREE CCAAT/enhancer binding protein delta (CEBPD) is a transcription factor found in activated astrocytes that surround β-amyloid plaques. 24788683 2015
Entrez Id: 6285
Gene Symbol: S100B
S100B
0.010 AlteredExpression disease BEFREE One such molecule, S100B, is highly expressed by reactive astrocytes in close vicinity of beta-amyloid deposits. 19705461 2010
Entrez Id: 2026
Gene Symbol: ENO2
ENO2
0.010 AlteredExpression disease BEFREE These results demonstrate an upregulation of γ-enolase in microglia cells surrounding amyloid plaques in Tg2576 transgenic mice and demonstrate its neuroprotective role in amyloid-β-related neurodegeneration. 23621429 2013
Entrez Id: 1522
Gene Symbol: CTSZ
CTSZ
0.010 AlteredExpression disease BEFREE In situ hybridization of γ-enolase and cathepsin X revealed that mRNAs for both enzymes were expressed abundantly around amyloid plaques. 23621429 2013
Entrez Id: 1508
Gene Symbol: CTSB
CTSB
0.010 AlteredExpression disease BEFREE Lentivirus-mediated expression of CatB in aged hAPP mice reduced preexisting amyloid deposits, even thioflavin S-positive plaques. 16982417 2006
Entrez Id: 28959
Gene Symbol: TMEM176B
TMEM176B
0.010 AlteredExpression disease BEFREE Tmem176b expression was highest in the inner zone of amyloid plaques, whereas TREM2 expression was highest in the outer zone. 20640189 2010
Entrez Id: 1509
Gene Symbol: CTSD
CTSD
0.010 AlteredExpression disease BEFREE This mutation event has been observed to alter the protease activity of the cathepsin D protein and has been linked to an increase in amyloid beta plaque formation in AD. vCJD neuropathology is characterised by the presence of amyloid plaques, formed from the prion protein, and therefore alterations in the amyloid processing activity of cathepsin D may affect the neuropathogenesis of this disease. 18426579 2008
Entrez Id: 2770
Gene Symbol: GNAI1
GNAI1
0.010 AlteredExpression disease BEFREE High ranking genes include a number previously linked in gene expression studies to β-amyloid plaque formation in the AD brain (PIK3R3,PIK3CG,PRKCAandPRKCB), and to AD related changes in hippocampal gene expression (ADCY2, ACTN1, ACACA, and GNAI1). 22982105 2012
Entrez Id: 2896
Gene Symbol: GRN
GRN
0.010 AlteredExpression disease BEFREE This elevated PGRN expression significantly reduced amyloid plaque burden in these mice, accompanied by reductions in markers of inflammation and synaptic atrophy. 28837568 2017